OUBCF

Welcome to the University of Oklahoma's E. coli Gene Expression Database
Instructions:  Search E. coli GenExpDB using either gene name and/or b-number (multiple entries separated by comma or space).
Example:  edd • b3517 • laca,lacy,lacz • 416366 (location)
OperonRegulonSigmaText    reset
  
lacZ 
Heatmap Legend:  Gene Expression Ratios are displayed colorimetrically. Blue/Red indicates genes which are induced and Yellow/Green indicates genes which are repressed (in the experimental condition compared to the control); the log2 ratios are scaled 2*standard deviation from the average logratio and darken to black to indicate no change in expression.   Hovering over a spot will display the logratio value and the ExperimentSet : Experiment.
Display:  Clicking on a heatmap bar will display either a graph, omics view or ERing of all infomation for that Experiment. Select Graph (default) to display experiment in a scatter plot. Select Omics ( EcoCyc ) to display an overlay of the transcriptome data on the metabolic pathway chart. Select ERing to view regulatory networks.
GraphOmicsERing
cynX → 102 ← lacA 65 ← lacY 51 ← lacZ 122 ← lacI 76 ← mhpR 190 mhpA →
METALINKSGENELOCUSFEATURESYNONYMSLEFT_ENDRIGHT_ENDDIROPERONREGULATED_BYSIGMAMULTIFUNPRODUCTFUNCTIONNOTE
lacZb0344gene,CDSECK0341, JW0335362455365529ccwlacZYAcrp +-, hns -, lacI -rpoD1.1.1.14, 7.1beta-D-galactosidaseenzyme; Degradation of small molecules: Carbon compoundsgo_component: cytoplasm [goid 0005737]; go_process: carbohydrate catabolic process [goid 0016052]
OPTIONSLABGROUPSPECIESGENOMEPROJECTEXPERIMENT SETARRAY TEMPLATECOMMENT
Conway LabEscherichia coliMG1655Diauxie Regulationwt_diauxie_entire_timeseriesMicro-spotted oligonucleotide(glass)MG1655 WT Glu-Lac diauxie
Conway LabEscherichia coliMG1655Diauxie RegulationrpoS_timeseriesMicro-spotted oligonucleotide(glass)MG1655 rpoS Glu-Lac diauxie
Conway LabEscherichia coliMG1655Diauxie Regulationcrp_timeseriesMicro-spotted oligonucleotide(glass)MG1655 crp Glu starvation (Lac- on glc-lac)
Conway LabEscherichia coliMG1655Diauxie RegulationrelA_diauxie_timeseriesMicro-spotted oligonucleotide(glass)MG1655 relA Glu-Lac diauxie
Conway LabEscherichia coliMG1655Diauxie Regulationdiauxie_mutant_setMicro-spotted oligonucleotide(glass)Compilation of wt, rpoS, crp, relA during diauxie lag
Conway LabEscherichia coliMG1655Carbon NutritionMUCUS_ARRAYSMacro-spotted PCR product(membrane)Mucus vs. glucose, standing cultures
Conway LabEscherichia coliMG1655Acetyl PhosphateACETYL_P_LOMacro-spotted PCR product(membrane)acetyl~P experiment set with threshold set at 125th lowest gene
Conway LabEscherichia coliMG1655Growth TransitionsDIAUXIEMacro-spotted PCR product(membrane)diauxie timepoints 1-17 vs. multi-control
Conway LabEscherichia coliMG1655Growth TransitionsH2O2Macro-spotted PCR product(membrane)H2O2 timepoints 1-12 vs. multi-control
Conway LabEscherichia coliMG1655Growth TransitionsTGC_V_1_4Macro-spotted PCR product(membrane)aerobic growth curve with control average of timpoints 1-4
Conway LabEscherichia coliMG1655Growth TransitionsAGTC_V_1_4Macro-spotted PCR product(membrane)Anaerobic growth curve with control average timepoints 1-4
Conway LabEscherichia coliMG1655Growth TransitionsANAEROB_V_AEROBICMacro-spotted PCR product(membrane)Anaerobic (AGTC) vs. Aerobic (TGC) multi-timepoint comparisons
Conway LabEscherichia coliMG1655GadXW and AcidGADXW_EXPMacro-spotted PCR product(membrane)GadXW Experiment: 20 pairwise comparisons of Experiments 1-16
Conway LabEscherichia coliMG1655Sugar_acidsSUGAR_ACIDSMacro-spotted PCR product(membrane)Sugar Acids
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OU Bioinformatics Core Facility @ Advanced Center for Genome Technology | updated:26 May 2011